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| |CheckM | | |CheckM |
| |Quality assessment tool for the microbial genomes | | |Quality assessment tool for the microbial genomes |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/biology/checkm/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://ecogenomics.github.io/CheckM/]] | + | |[[https://svnweb.freebsd.org/ports/head/biology/checkm/pkg-descr?revision=HEAD]] [[https://ecogenomics.github.io/CheckM/]] |
| |- | | |- |
| |GroopM | | |GroopM |
| |Metagenomic binning suite | | |Metagenomic binning suite |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/biology/groopm/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=http://ecogenomics.github.io/GroopM/]] | + | |[[https://svnweb.freebsd.org/ports/head/biology/groopm/pkg-descr?revision=HEAD]] [[http://ecogenomics.github.io/GroopM/]] |
| |- | | |- |
| |InsightToolkit | | |InsightToolkit |
| |Insight Toolkit | | |Insight Toolkit |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/InsightToolkit/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=http://www.itk.org]] | + | |[[https://svnweb.freebsd.org/ports/head/science/InsightToolkit/pkg-descr?revision=HEAD]] [[http://www.itk.org]] |
| |- | | |- |
| |Jellyfish | | |Jellyfish |
| |Fast, memory-efficient counting of k-mers in DNA | | |Fast, memory-efficient counting of k-mers in DNA |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/biology/jellyfish/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=http://www.genome.umd.edu/jellyfish.html]] | + | |[[https://svnweb.freebsd.org/ports/head/biology/jellyfish/pkg-descr?revision=HEAD]] [[http://www.genome.umd.edu/jellyfish.html]] |
| |- | | |- |
| |abyss | | |abyss |
| |Assembly By Short Sequences: parallel, paired-end sequence assembler | | |Assembly By Short Sequences: parallel, paired-end sequence assembler |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/afni/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=http://afni.nimh.nih.gov/afni/]] | + | |[[https://svnweb.freebsd.org/ports/head/science/afni/pkg-descr?revision=HEAD]] [[http://afni.nimh.nih.gov/afni/]] |
| |- | | |- |
| |afni | | |afni |
| |Advanced Functional Neuro Imaging | | |Advanced Functional Neuro Imaging |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/afni/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=http://afni.nimh.nih.gov/afni/]] | + | |[[https://svnweb.freebsd.org/ports/head/science/afni/pkg-descr?revision=HEAD]] [[http://afni.nimh.nih.gov/afni/]] |
| |- | | |- |
| |artemis | | |artemis |
| |DNA sequence viewer and annotation tool | | |DNA sequence viewer and annotation tool |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/biology/artemis/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://www.sanger.ac.uk/science/tools/artemis]] | + | |[[https://svnweb.freebsd.org/ports/head/biology/artemis/pkg-descr?revision=HEAD]] [[https://www.sanger.ac.uk/science/tools/artemis]] |
| |- | | |- |
| |avida | | |avida |
| |Auto-adaptive genetic system designed for ALife research | | |Auto-adaptive genetic system designed for ALife research |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/biology/avida/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=http://avida.devosoft.org/]] | + | |[[https://svnweb.freebsd.org/ports/head/biology/avida/pkg-descr?revision=HEAD]] [[http://avida.devosoft.org/]] |
| |- | | |- |
| |babel | | |babel |
| |Converts among various molecular file formats | | |Converts among various molecular file formats |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/biology/babel/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=http://smog.com/chem/babel/]] | + | |[[https://svnweb.freebsd.org/ports/head/biology/babel/pkg-descr?revision=HEAD]] [[http://smog.com/chem/babel/]] |
| |- | | |- |
| |bamtools | | |bamtools |
| |API and toolkit for handling BAM files | | |API and toolkit for handling BAM files |
− | |[[File:1329059652.png|35px|link=https://github.com/pezmaster31/bamtools]] | + | |[[https://github.com/pezmaster31/bamtools]] |
| |- | | |- |
| |biococoa | | |biococoa |
| |Bioinformatics framework | | |Bioinformatics framework |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/biology/biococoa/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=http://bioinformatics.org/biococoa/]] | + | |[[https://svnweb.freebsd.org/ports/head/biology/biococoa/pkg-descr?revision=HEAD]] [[http://bioinformatics.org/biococoa/]] |
| |- | | |- |
− | |canu | + | | |
− | |Single molecule sequence assembler
| + | |[[]] [[]] |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/biology/canu/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://canu.readthedocs.io/]] | + | |
| |- | | |- |
− | |cycle | + | | |
− | |Calendar program for women
| + | |[[]] [[]] |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/deskutils/cycle/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=http://cycle.sourceforge.net/]] | + | |
| |- | | |- |
− | |cytoscape | + | | |
− | |Software to visualize molecular interaction networks, gene expression
| + | |[[]] [[]] |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/biology/cytoscape/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=http://www.cytoscape.org]] | + | |
| |- | | |- |
− | |dDocent | + | | |
− | |Bash pipeline for RAD sequencing
| + | |[[]] [[]] |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/biology/ddocent/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=http://ddocent.com]] | + | |
| |- | | |- |
− | |emboss | + | | |
− | |Collection of open source tools for genetic sequence analysis
| + | |[[]] [[]] |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/biology/emboss/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=http://www.emboss.org/]] | + | |
| |- | | |- |
− | |figtree | + | | |
− | |Graphical viewer of phylogenetic trees
| + | |[[]] [[]] |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/biology/figtree/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=http://tree.bio.ed.ac.uk/software/figtree/]] | + | |
| |- | | |- |
− | |garlic | + | | |
− | |Molecular viewer, editor, and visualization program
| + | |[[]] [[]] |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/biology/garlic/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=http://www.zucic.org/garlic/]] | + | |
| |- | | |- |
− | |gperiodic | + | | |
− | |Displays a periodic table of the elements
| + | |[[]] [[]] |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/biology/gperiodic/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=http://www.frantz.fi/software/gperiodic.php]] | + | |
| |- | | |- |
− | |haplohseq | + | | |
− | |Identify regions of allelic imbalance
| + | |[[]] [[]] |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/biology/haplohseq/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://sites.google.com/site/integrativecancergenomics/software/haplohseq]] | + | |
| |- | | |- |
− | |hhsuite | + | | |
− | |Remote protein homology detection suite
| + | |[[]] [[]] |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/biology/hhsuite/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://github.com/soedinglab/hh-suite]] | + | |
| |- | | |- |
− | |igv | + | | |
− | |Visualization tool for genomic datasets
| + | |[[]] [[]] |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/biology/igv/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://software.broadinstitute.org/software/igv/]] | + | |
| |- | | |- |
− | |jalview | + | | |
− | |Viewer and editor for multiple sequence alignments
| + | |[[]] [[]] |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/biology/jalview/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=http://www.jalview.org]] | + | |
| |- | | |- |
− | |kallisto | + | | |
− | |Quantify abundances of transcripts from RNA-Seq data
| + | |[[]] [[]] |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/biology/kallisto/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://pachterlab.github.io/kallisto/about.html]] | + | |
− | |-
| + | |
− | |libghemical
| + | |
− | |Support libraries of science/ghemical port
| + | |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/libghemical/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://www.bioinformatics.org/ghemical/ghemical/index.html]]
| + | |
− | |-
| + | |
− | |mafft
| + | |
− | |Multiple alignment program for amino acid or nucleotide sequences
| + | |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/biology/mafft/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=http://mafft.cbrc.jp/alignment/software/]]
| + | |
− | |-
| + | |
− | |massxpert
| + | |
− | |massXpert software for (bio)chemists
| + | |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/massxpert/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://salsa.debian.org/debichem-team/massxpert]]
| + | |
− | |-
| + | |
− | |minc2
| + | |
− | |Medical Imaging NetCDF
| + | |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/minc2/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=http://www.bic.mni.mcgill.ca/ServicesSoftware/MINC]]
| + | |
− | |-
| + | |
− | |molden
| + | |
− | |Display molecular orbitals and electron densities in 2D and 3D
| + | |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/biology/molden/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=http://www.cmbi.ru.nl/molden/]]
| + | |
− | |-
| + | |
− | |mmtf-cpp
| + | |
− | |C++ MMTF format API, decoder and encoder, for molecular structures
| + | |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/mmtf-cpp/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://mmtf.rcsb.org/]]
| + | |
− | |-
| + | |
− | |ncbi-blast
| + | |
− | |NCBI implementation of Basic Local Alignment Search Tool
| + | |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/biology/ncbi-blast+/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=http://blast.ncbi.nlm.nih.gov]]
| + | |
− | |-
| + | |
− | |namd
| + | |
− | |Computer software for molecular dynamics simulation
| + | |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/namd/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://www.ks.uiuc.edu/Research/namd/]]
| + | |
− | |-
| + | |
− | |ncbi-cxx-toolkit-
| + | |
− | |NCBI C++ Toolkit
| + | |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/biology/ncbi-cxx-toolkit/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/]]
| + | |
− | |-
| + | |
− | |p5-Bio-ASN1-EntrezGene
| + | |
− | |Regular expression-based Perl Parser for NCBI Entrez Gene
| + | |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/biology/p5-Bio-ASN1-EntrezGene/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://metacpan.org/release/Bio-ASN1-EntrezGene]]
| + | |
− | |-
| + | |
− | |p5-Bio-Cluster
| + | |
− | |BioPerl cluster modules
| + | |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/biology/p5-Bio-Cluster/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://metacpan.org/release/Bio-Cluster]]
| + | |
− | |-
| + | |
− | |p5-Bio-Coordinate
| + | |
− | |Modules for working with biological coordinates
| + | |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/biology/p5-Bio-Coordinate/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://metacpan.org/release/Bio-Coordinate]]
| + | |
− | |-
| + | |
− | |p5-Bio-DB-EMBL
| + | |
− | |Database object interface for EMBL entry retrieval
| + | |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/biology/p5-Bio-DB-EMBL/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://metacpan.org/release/Bio-DB-EMBL]]
| + | |
− | |-
| + | |
− | |p5-Bio-DB-NCBIHelper
| + | |
− | |Collection of routines useful for queries to NCBI databases
| + | |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/biology/p5-Bio-DB-NCBIHelper/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://metacpan.org/release/Bio-DB-NCBIHelper]]
| + | |
− | |-
| + | |
− | |p5-Bio-Das
| + | |
− | |Client-side library for Distributed Genome Annotation System
| + | |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/biology/p5-Bio-Das/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://metacpan.org/release/Bio-Das]]
| + | |
− | |-
| + | |
− | |p5-Bio-Das-Lite
| + | |
− | |Perl extension for the DAS (HTTP+XML) Protocol
| + | |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/biology/p5-Bio-Das-Lite/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://metacpan.org/release/Bio-Das-Lite]]
| + | |
− | |-
| + | |
− | |p5-Bio-FeatureIO
| + | |
− | |Handler for FeatureIO
| + | |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/biology/p5-Bio-FeatureIO/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://metacpan.org/release/Bio-FeatureIO]]
| + | |
− | |-
| + | |
− | |p5-Bio-GFF3
| + | |
− | |Fast low-level functions for parsing and formatting GFF3
| + | |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/biology/p5-Bio-GFF3/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://metacpan.org/release/Bio-GFF3]]
| + | |
− | |-
| + | |
− | |p5-Bio-Glite
| + | |
− | |Perl Interface to G-language
| + | |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/biology/p5-Bio-Glite/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://metacpan.org/release/Bio-Glite]]
| + | |
− | |-
| + | |
− | |p5-Bio-Graphics
| + | |
− | |Generate GD Images of Bio::Seq Objects
| + | |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/biology/p5-Bio-Graphics/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://metacpan.org/release/Bio-Graphics]]
| + | |
− | |-
| + | |
− | |p5-Bio-MAGETAB
| + | |
− | |Data model and utility API for the MAGE-TAB format
| + | |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/biology/p5-Bio-MAGETAB/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://metacpan.org/release/Bio-MAGETAB]]
| + | |
− | |-
| + | |
− | |p5-Bio-NEXUS
| + | |
− | |Object-oriented Perl API for the NEXUS file format
| + | |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/biology/p5-Bio-NEXUS/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://metacpan.org/release/Bio-NEXUS]]
| + | |
− | |-
| + | |
− | |p5-Bio-Phylo
| + | |
− | |Phylogenetic analysis using Perl
| + | |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/biology/p5-Bio-Phylo/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://metacpan.org/release/Bio-Phylo]]
| + | |
− | |-
| + | |
− | |p5-Bio-SCF
| + | |
− | |Read and Update SCF Chromatographic Sequence Files
| + | |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/biology/p5-Bio-SCF/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://metacpan.org/release/Bio-SCF]]
| + | |
− | |-
| + | |
− | |p5-Bio-Variation
| + | |
− | |BioPerl variation-related functionality
| + | |
− | |[[File:1329059652.png|35px|link=https://metacpan.org/release/Bio-Variation]]
| + | |
− | |-
| + | |
− | |p5-BioPerl
| + | |
− | |Collection of Perl modules for bioinformatics
| + | |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/biology/p5-BioPerl/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://bioperl.org/]]
| + | |
− | |-
| + | |
− | |p5-BioPerl-Run
| + | |
− | |Wrapper modules for common bioinformatics tools
| + | |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/biology/p5-BioPerl-Run/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://github.com/bioperl/bioperl-run]]
| + | |
− | |-
| + | |
− | |p5-TrimGalore
| + | |
− | |Wrapper around Cutadapt and FastQC for adapter and quality trimming
| + | |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/biology/p5-TrimGalore/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://github.com/FelixKrueger/TrimGalore]]
| + | |
− | |-
| + | |
− | |pbcopper
| + | |
− | |Core C++ library for Pacific Biosciences tools
| + | |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/biology/pbcopper/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://github.com/PacificBiosciences/pbcopper]]
| + | |
− | |-
| + | |
− | |plinkseq
| + | |
− | |Toolset for working with human genetic variation data
| + | |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/biology/plinkseq/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=http://atgu.mgh.harvard.edu/plinkseq/]]
| + | |
− | |-
| + | |
− | |prodigal
| + | |
− | |Protein-coding gene prediction for prokaryotic genomes
| + | |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/biology/prodigal/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://github.com/hyattpd/Prodigal]]
| + | |
− | |-
| + | |
− | |py27-multiqc
| + | |
− | |Aggregate bioinformatics analysis reports across samples and tools
| + | |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/biology/py-multiqc/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://pypi.python.org/pypi/multiqc]]
| + | |
− | |-
| + | |
− | |py27-pymol
| + | |
− | |OpenGL-based molecular visualization system
| + | |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/py-pymol/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://pymol.org/2/]]
| + | |
− | |-
| + | |
− | |py37-chainer-chemistry
| + | |
− | |Library for deep learning in biology and chemistry
| + | |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/py-chainer-chemistry/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://github.com/pfnet-research/chainer-chemistry]]
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− | |-
| + | |
− | |py37-multiqc
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− | |Aggregate bioinformatics analysis reports across samples and tools
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− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/biology/py-multiqc/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://pypi.python.org/pypi/multiqc]]
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− | |-
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− | |py37-orange3-bioinformatics
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− | |Orange add-on providing common functionality for bioinformatics
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− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/biology/py-orange3-bioinformatics/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://github.com/biolab/orange3-bioinformatics]]
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− | |-
| + | |
− | |py37-orange3-single-cell
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− | |Orange add-on for gene expression of single cell data
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− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/biology/py-orange3-single-cell/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://singlecell.biolab.si/]]
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− | |-
| + | |
− | |pycogent
| + | |
− | |Toolkit for statistical analysis of biological sequences
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− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/biology/pycogent/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=http://pycogent.sourceforge.net/]]
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− | |-
| + | |
− | |raster3d
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− | |Set of tools for generating raster images of proteins and molecules
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− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/graphics/raster3d/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=http://skuld.bmsc.washington.edu/raster3d/]]
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− | |-
| + | |
− | |seqtools
| + | |
− | |Tools for visualising sequence alignments
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− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/biology/seqtools/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=http://www.sanger.ac.uk/science/tools/seqtools]]
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− | |-
| + | |
− | |ugene
| + | |
− | |Free, open-source, cross-platform bioinformatics toolkit
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− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/biology/ugene/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=http://ugene.unipro.ru/]]
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| |- | | |- |
| !colspan="3"| | | !colspan="3"| |
| |- | | |- |
− | !colspan="3"|'''If you don't find a package, you are looking for, <br/>we recommend to search the ''' [[File:Icon FreeBSD.png|50px|link=https://www.freebsd.org/ports/categories-grouped.html]]'''Ports Collection. If it is there, than it is also in the GhostBSD ports. ''' | + | !colspan="3"|'''If you don't find a package, you are looking for, <br/>we recommend to search the ''' [[File:Icon FreeBSD.png|50px|link=https://www.freebsd.org/ports/categories-grouped.html]]'''Ports Collection.''' |
| |- | | |- |
| !colspan="3"| | | !colspan="3"| |
| |- | | |- |
− | !colspan="3"|'''Back to ''' [[image:Icon Disti GhostBSD.png|50px|link=Science and Engineering]] '''Science and Engineering''' | + | !colspan="3"|'''Back to the''' [[image:Icon Disti GhostBSD.png|50px|link=Office Applications]]'''Office Applications''' |
| + | |
| |} | | |} |
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| [[Category:Station]] | | [[Category:Station]] |