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|[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/opsin/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://bitbucket.org/dan2097/opsin/src/default/]]
 
|[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/opsin/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://bitbucket.org/dan2097/opsin/src/default/]]
 
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|-
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|p5-Chemistry-3DBuilder
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|Generate 3D coordinates from a connection table
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|[[]] [[]]
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|[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/p5-Chemistry-3DBuilder/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://metacpan.org/release/Chemistry-3DBuilder]]
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|-
 
|-
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|p5-Chemistry-Bond-Find
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|Detect bonds in a molecule and assign formal bond orders
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|[[]] [[]]
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|[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/p5-Chemistry-Bond-Find/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://metacpan.org/release/Chemistry-Bond-Find]]
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|-
 
|-
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|p5-Chemistry-Canonicalize
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|Number the atoms in a molecule in a unique way
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|[[]] [[]]  
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|[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/p5-Chemistry-Canonicalize/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://metacpan.org/release/Chemistry-Canonicalize]]
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|-
 
|-
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|p5-Chemistry-Elements
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|Perl extension for working with Chemical Elements
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|[[]] [[]]
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|[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/p5-Chemistry-Elements/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://metacpan.org/release/Chemistry-Elements]]
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|-
 
|-
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|p5-Chemistry-File-MDLMol
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|MDL molfile reader/write
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|[[]] [[]]
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|[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/p5-Chemistry-File-MDLMol/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://metacpan.org/release/Chemistry-File-SMARTS]]
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|-
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|p5-Chemistry-File-Mopac
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|MOPAC 6 input file reader/writer
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|[[File:1329059652.png|35px|link=https://metacpan.org/release/Chemistry-File-Mopac]]
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|- 
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|p5-Chemistry-File-PDB
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|Perl module to read and write PDB files
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|[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/p5-Chemistry-File-PDB/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://metacpan.org/release/Chemistry-File-PDB]]
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|-
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|p5-Chemistry-File-SLN
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|SLN linear notation parser/writer
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|[[File:1329059652.png|35px|link=https://metacpan.org/release/Chemistry-File-SLN]]
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|-
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|p5-Chemistry-File-SMARTS
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|SMARTS chemical substructure pattern linear notation parser
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|[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/p5-Chemistry-File-SMARTS/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://metacpan.org/release/Chemistry-File-SMARTS]]
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|-
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|p5-Chemistry-File-SMILES
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|SMILES linear notation parser/writer
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|[[File:1329059652.png|35px|link=https://metacpan.org/release/Chemistry-File-SMILES]]
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|-
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|p5-Chemistry-File-VRML
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|Generate VRML models for molecules
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|[[File:1329059652.png|35px|link=https://metacpan.org/release/Chemistry-File-VRML]]
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|-
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|p5-Chemistry-File-XYZ
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|XYZ molecule format reader/writer
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|[[File:1329059652.png|35px|link=https://metacpan.org/release/Chemistry-File-XYZ]]
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|-
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|p5-Chemistry-FormulaPattern
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|Match molecule by formula
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|[[File:1329059652.png|35px|link=https://metacpan.org/release/Chemistry-FormulaPattern]]
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|-
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|p5-Chemistry-InternalCoords
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|Represent the position of an atom using internal coordinates
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|[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/p5-Chemistry-InternalCoords/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://metacpan.org/release/Chemistry-InternalCoords]]
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|-
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|p5-Chemistry-Isotope
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|Table of the isotopes exact mass data
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|[[File:1329059652.png|35px|link=https://metacpan.org/release/Chemistry-Isotope]]
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|-
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|p5-Chemistry-MacroMol
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|Perl toolkit to describe macromolecules
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|[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/p5-Chemistry-MacroMol/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://metacpan.org/release/Chemistry-MacroMol]]
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|-
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|p5-Chemistry-MidasPattern
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|Select atoms in macromolecules
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|[[File:1329059652.png|35px|link=https://metacpan.org/release/Chemistry-MidasPattern]]
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|-
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|p5-Chemistry-Mok
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|Molecular awk interpreter
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|[[File:1329059652.png|35px|link=https://metacpan.org/release/Chemistry-Mok]]
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|-
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|p5-Chemistry-Mol
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|Perl toolkit to describe molecules
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|[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/p5-Chemistry-Mol/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://metacpan.org/release/Chemistry-Mol]]
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|-
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|p5-Chemistry-Pattern
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|Chemical substructure pattern matching
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|[[File:1329059652.png|35px|link=https://metacpan.org/release/Chemistry-Pattern]]
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|-
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|p5-Chemistry-Reaction
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|Represent a ring as a substructure of a molecule
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|[[File:1329059652.png|35px|link=https://metacpan.org/release/Chemistry-Reaction]]
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|-
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|p5-Chemistry-Ring
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|Represent a ring as a substructure of a molecule
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|[[File:1329059652.png|35px|link=https://metacpan.org/release/Chemistry-Ring]]
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|-
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|p5-PerlMol
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|Perl modules for molecular chemistry
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|[[File:1329059652.png|35px|link=https://metacpan.org/release/PerlMol]]
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|-
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|packmol
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|Pack molecules in defined regions of space
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−
|[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/packmol/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=http://m3g.iqm.unicamp.br/packmol/home.shtml]]
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−
|-
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|pcmsolver
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|API for the Polarizable Continuum Model
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|[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/pcmsolver/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://github.com/PCMSolver/pcmsolver]]
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|-
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−
|py27-MDAnalysis
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|Python library to analyze molecular dynamics trajectories
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|[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/py-MDAnalysis/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://www.mdanalysis.org]]
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−
|-
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|py27-MDAnalysisTests
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|Test code and the trajectory data for test cases of MDAnalysis
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−
|[[File:1329059652.png|35px|link=https://www.mdanalysis.org]]
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−
|-
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|py27-PyQuante
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|Quantum chemistry in Python
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|[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/py-PyQuante/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=http://pyquante.sourceforge.net/]]
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−
|-
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−
|py27-pymol
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|OpenGL-based molecular visualization system
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−
|[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/py-pymol/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://pymol.org/2/]]
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−
|-
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|py37-MDAnalysis
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|Python library to analyze molecular dynamics trajectories
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|[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/py-MDAnalysis/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://www.mdanalysis.org]]
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−
|-
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−
|py37-MDAnalysisTests
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|Test code and the trajectory data for test cases of MDAnalysis
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−
|[[File:1329059652.png|35px|link=https://www.mdanalysis.org]]
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−
|-
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−
|py37-avogadrolibs
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|Python bindings for Avogadro2 chemistry libraries
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−
|[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/py-avogadrolibs/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://www.openchemistry.org/projects/avogadro2/]]
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−
|-
+
−
|py37-chainer-chemistry
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|Library for deep learning in biology and chemistry
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−
|[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/py-chainer-chemistry/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://github.com/pfnet-research/chainer-chemistry]]
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−
|-
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−
|py37-chempy
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|Package useful for solving problems in chemistry
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−
|[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/py-chempy/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://github.com/bjodah/chempy]]
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−
|-
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−
|py37-gpaw
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|DFT and beyond within the projector-augmented wave method in chemistry
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−
|[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/py-gpaw/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://wiki.fysik.dtu.dk/gpaw/]]
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−
|-
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−
|py37-molmod
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|Collection of molecular modelling tools for python
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−
|[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/py-molmod/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://github.com/molmod/molmod]]
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−
|-
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−
|py37-qcelemental
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|Essentials for quantum chemistry
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−
|[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/py-qcelemental/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://github.com/MolSSI/QCElemental]]
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−
|-
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−
|py37-qcengine
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|Quantum chemistry program executor and IO standardizer (QCSchema)
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−
|[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/py-qcengine/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://github.com/MolSSI/QCEngine]]
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−
|-
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−
|py37-qspin
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|Learn quantum spin and entanglement
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−
|[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/py-qspin/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://bitbucket.org/donald_gavel/qspin]]
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−
|-
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−
|py37-rmf
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−
|Library to support reading and writing of Rich Molecular Format files
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−
|[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/py-rmf/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://integrativemodeling.org/rmf/]]
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−
|-
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−
|py37-scoria
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−
|Lightweight molecule manipulation codebase
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−
|[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/py-scoria/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://git.durrantlab.com/jdurrant/scoria]]
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−
|-
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−
|qbox
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|First-principles molecular dynamics code
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−
|[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/qbox/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=http://qboxcode.org/]]
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−
|-
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−
|qmcpack
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|Many-body ab initio Quantum Monte Carlo code for quantum chemstry
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−
|[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/qmcpack/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://www.qmcpack.org/]]
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!colspan="3"|'''Back to ''' [[image:Icon Disti GhostBSD.png|50px|link=Science and Engineering]] '''Science and Engineering'''
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!colspan="3"|'''Back to the''' [[image:Icon Disti GhostBSD.png|50px|link=Office Applications]]'''Office Applications'''
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|}
 
|}
  
  
 
[[Category:Station]]
 
[[Category:Station]]

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