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| |Clock-driven simulator for spiking neural networks | | |Clock-driven simulator for spiking neural networks |
| |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/brian/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=http://www.briansimulator.org/]] | | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/brian/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=http://www.briansimulator.org/]] |
| + | |- |
| + | |cdcl |
| + | |Scientific graphic library for geoscience |
| + | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/cdcl/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=http://www.gfd-dennou.org/arch/dcl/]] |
| |- | | |- |
| |cdf3 | | |cdf3 |
| |Device independent view of the CDF data model | | |Device independent view of the CDF data model |
| |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/cdf/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://cdf.gsfc.nasa.gov/]] | | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/cdf/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://cdf.gsfc.nasa.gov/]] |
− | | + | |- |
| + | |cdo |
| + | |Climate Data Operators |
| + | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/cdo/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://code.mpimet.mpg.de/projects/cdo]] |
| |- | | |- |
| |cgribex | | |cgribex |
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| |Schrodinger-developed 2D coordinate generation | | |Schrodinger-developed 2D coordinate generation |
| |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/coordgenlibs/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://github.com/schrodinger/coordgenlibs]] | | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/coordgenlibs/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://github.com/schrodinger/coordgenlibs]] |
− | | + | |- |
| + | |dcl |
| + | |Scientific graphic library for geoscience |
| + | |[[File:1329059652.png|35px|link=http://www.gfd-dennou.org/arch/dcl/]] |
| |- | | |- |
| |devisor | | |devisor |
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| |Free open source neural network library | | |Free open source neural network library |
| |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/math/fann/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=http://leenissen.dk/]] | | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/math/fann/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=http://leenissen.dk/]] |
− | | + | |- |
| + | |fvcom |
| + | |Unstructured Grid Finite Volume Coastal Ocean Model |
| + | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/fvcom/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=http://fvcom.smast.umassd.edu/FVCOM/index.html]] |
| + | |- |
| + | |fvcom-openmpi |
| + | |Unstructured Grid Finite Volume Coastal Ocean Model |
| + | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/fvcom/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=http://fvcom.smast.umassd.edu/FVCOM/index.html]] |
| |- | | |- |
| |gnudatalanguage | | |gnudatalanguage |
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| |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/gwyddion/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=http://gwyddion.net/]] | | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/gwyddion/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=http://gwyddion.net/]] |
| |- | | |- |
− | |h5utils | + | | |
− | |Set of utilities for visualization and conversion of HDF5 format
| + | |[[]] [[]] |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/h5utils/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://github.com/stevengj/h5utils]] | + | |
| |- | | |- |
− | |h5z-zfp | + | | |
− | |Registered ZFP compression plugin for HDF5
| + | |[[]] [[]] |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/h5z-zfp/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://h5z-zfp.readthedocs.io/en/latest/]] | + | |
| |- | | |- |
− | |harminv | + | | |
− | |Solver of harmonic inversion
| + | |[[]] [[]] |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/harminv/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=http://ab-initio.mit.edu/wiki/index.php/Harminv]] | + | |
| |- | | |- |
− | |hdf | + | | |
− | |Hierarchical Data Format library (from NCSA)
| + | |[[]] [[]] |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/hdf/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=http://www.hdfgroup.org/products/hdf4/]] | + | |
| |- | | |- |
− | |hdf-szip | + | | |
− | |Lossless compression library for scientific data
| + | |[[]] [[]] |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/szip/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://support.hdfgroup.org/doc_resource/SZIP/]] | + | |
| |- | | |- |
− | |hdf5 | + | | |
− | |Hierarchical Data Format library (from NCSA)
| + | |[[]] [[]] |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/hdf5/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://www.hdfgroup.org/]] | + | |
| |- | | |- |
− | |hdf5-18 | + | | |
− | |Hierarchical Data Format library (from NCSA) 1.8
| + | |[[]] [[]] |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/hdf5-18/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=http://www.hdfgroup.org/HDF5/]] | + | |
| |- | | |- |
− | |healpix | + | | |
− | |Software for pixelization, visualization, etc of data on the sphere
| + | |[[]] [[]] |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/healpix/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://healpix.jpl.nasa.gov/]] | + | |
| |- | | |- |
− | |hhsuite | + | | |
− | |Remote protein homology detection suite
| + | |[[]] [[]] |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/biology/hhsuite/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://github.com/soedinglab/hh-suite]] | + | |
| |- | | |- |
− | |highfive | + | | |
− | |Header-only C++ HDF5 interface
| + | |[[]] [[]] |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/highfive/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://github.com/BlueBrain/HighFive]] | + | |
− | |-
| + | |
− | |hypre
| + | |
− | |Scalable Linear Solvers and Multigrid Methods
| + | |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/hypre/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://computation.llnl.gov/projects/hypre-scalable-linear-solvers-multigrid-methods]]
| + | |
− | | + | |
− | |-
| + | |
− | |libaec
| + | |
− | |Adaptive entropy coding library
| + | |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/libaec/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://gitlab.dkrz.de/k202009/libaec]]
| + | |
− | |-
| + | |
− | |libccp4
| + | |
− | |Protein X-ray crystallography toolkit
| + | |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/libccp4/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://www.ccp4.ac.uk/]]
| + | |
− | |-
| + | |
− | |libgeodecomp
| + | |
− | |LibGeoDecomp is an auto-parallelizing library for computer simulations
| + | |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/libgeodecomp/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=http://www.libgeodecomp.org/]]
| + | |
− | |-
| + | |
− | |libghemical
| + | |
− | |Support libraries of science/ghemical port
| + | |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/libghemical/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://www.bioinformatics.org/ghemical/ghemical/index.html]]
| + | |
− | |-
| + | |
− | |libquantum
| + | |
− | |C library for quantum computing and quantum simulation
| + | |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/libquantum/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=http://www.libquantum.de/]]
| + | |
− | |-
| + | |
− | |libsvm
| + | |
− | |Library for Support Vector Machines
| + | |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/libsvm/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=http://www.csie.ntu.edu.tw/~cjlin/libsvm/]]
| + | |
− | |-
| + | |
− | |libxc
| + | |
− | |Library of exchange-correlation functionals for DFT
| + | |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/libxc/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=http://www.tddft.org/programs/libxc/]]
| + | |
− | |-
| + | |
− | |libxsmm
| + | |
− | |Library for dense and sparse matrix operations and deep learning
| + | |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/math/libxsmm/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://github.com/hfp/libxsmm]]
| + | |
− | |-
| + | |
− | |madness
| + | |
− | |Multiresolution adaptive numeric environment for scientific simulation
| + | |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/madness/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://github.com/m-a-d-n-e-s-s/madness]]
| + | |
− | |-
| + | |
− | |mcstas
| + | |
− | |Monte Carlo neutron ray tracing package
| + | |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/mcstas/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=http://www.mcstas.org]]
| + | |
− | |-
| + | |
− | |mcstas-comps
| + | |
− | |Component Library for the McStas neutron ray tracing package
| + | |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/mcstas-comps/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=http://www.mcstas.org]]
| + | |
− | |-
| + | |
− | |mcxtrace
| + | |
− | |Monte Carlo X-ray tracing package
| + | |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/mcxtrace/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=http://www.mcxtrace.org]]
| + | |
− | |-
| + | |
− | |mcxtrace-comps
| + | |
− | |Component Library for the McXtrace X-ray tracing package
| + | |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/mcxtrace-comps/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=http://www.mcxtrace.org]]
| + | |
− | |-
| + | |
− | |mdynamix
| + | |
− | |General purpose molecular dynamics code
| + | |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/mdynamix/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=http://www.fos.su.se/~sasha/mdynamix/]]
| + | |
− | |-
| + | |
− | |minc2
| + | |
− | |Medical Imaging NetCDF
| + | |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/minc2/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=http://www.bic.mni.mcgill.ca/ServicesSoftware/MINC]]
| + | |
− | |-
| + | |
− | |nifticlib
| + | |
− | |Neuroimaging Informatics Technology Initiative data format
| + | |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/nifticlib/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=http://nifti.nimh.nih.gov/]]
| + | |
− | |-
| + | |
− | |octopus
| + | |
− | |Scientific program aimed at the ab initio virtual experimentation
| + | |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/octopus/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=http://octopus-code.org/wiki/Main_Page]]
| + | |
− | |-
| + | |
− | |p5-Algorithm-SVMLight
| + | |
− | |Perl interface to SVMLight Machine-Learning Package
| + | |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/p5-Algorithm-SVMLight/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://metacpan.org/release/Algorithm-SVMLight]]
| + | |
− | |-
| + | |
− | |p5-Geo-BUFR
| + | |
− | |Perl extension for handling of WMO BUFR files
| + | |
− | |[[File:Icon FreeBSD.png|100px|link=ttps://svnweb.freebsd.org/ports/head/science/p5-Geo-BUFR/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://metacpan.org/release/Geo-BUFR]]
| + | |
− | | + | |
− | |-
| + | |
− | |p5-Mcstas-Tools
| + | |
− | |Perl based tools for the McStas neutron ray tracing package
| + | |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/p5-Mcstas-Tools/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=http://www.mcstas.org]]
| + | |
− | |-
| + | |
− | |p5-Quantum-Superpositions
| + | |
− | |QM-like superpositions in Perl
| + | |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/lang/p5-Quantum-Superpositions/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://metacpan.org/release/Quantum-Superpositions]]
| + | |
− | |-
| + | |
− | |pagmo2
| + | |
− | |Platform to perform parallel computations of optimization tasks
| + | |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/pagmo2/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://github.com/esa/pagmo2]]
| + | |
− | |-
| + | |
− | |paraview
| + | |
− | |Powerful scientific data visualization application
| + | |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/paraview/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=http://www.paraview.org/]]
| + | |
− | |-
| + | |
− | |parmgridgen
| + | |
− | |Library for obtaining a sequence of successive coarse grids
| + | |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/math/parmgridgen/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=http://www.mgnet.org/mgnet-codes-parmgridgen.html]]
| + | |
− | |-
| + | |
− | |plinkseq
| + | |
− | |Toolset for working with human genetic variation data
| + | |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/biology/plinkseq/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=http://atgu.mgh.harvard.edu/plinkseq/]]
| + | |
− | |-
| + | |
− | |plplot
| + | |
− | |Scientific plotting package
| + | |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/math/plplot/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=http://plplot.sourceforge.net/]]
| + | |
− | |-
| + | |
− | |pnetcdf
| + | |
− | |Library providing high-performance I/O
| + | |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/pnetcdf/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://trac.mcs.anl.gov/projects/parallel-netcdf]]
| + | |
− | |-
| + | |
− | |praat
| + | |
− | |Phonetics by Computer
| + | |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/audio/praat/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=http://www.praat.org]]
| + | |
− | |-
| + | |
− | |psychopy
| + | |
− | |Psychophysics toolkit for Python
| + | |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/psychopy/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=http://www.psychopy.org/]]
| + | |
− | |-
| + | |
− | |pulseview
| + | |
− | |GUI client that supports various hardware logic analyzers
| + | |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/pulseview/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://sigrok.org/]]
| + | |
− | |-
| + | |
− | |py27-DendroPy
| + | |
− | |Phylogenetic computing library
| + | |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/py-DendroPy/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=http://packages.python.org/DendroPy/]]
| + | |
− | |-
| + | |
− | |py27-GPy
| + | |
− | |Gaussian process toolbox
| + | |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/py-GPy/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://sheffieldml.github.io/GPy/]]
| + | |
− | |-
| + | |
− | |py27-GPyOpt
| + | |
− | |Bayesian optimization toolbox based on GPy
| + | |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/py-GPyOpt/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://sheffieldml.github.io/GPyOpt/]]
| + | |
− | |-
| + | |
− | |py27-OpenFermion
| + | |
− | |Electronic structure package for quantum computers
| + | |
− | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/py-OpenFermion/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://github.com/quantumlib/OpenFermion]]
| + | |
| |- | | |- |
| !colspan="3"| | | !colspan="3"| |
| |- | | |- |
− | !colspan="3"|'''If you don't find a package, you are looking for, <br/>we recommend to search the ''' [[File:Icon FreeBSD.png|50px|link=https://www.freebsd.org/ports/science.html]]'''Category Science in tne Ports Collection.''' | + | !colspan="3"|'''If you don't find a package, you are looking for, <br/>we recommend to search the ''' [[File:Icon FreeBSD.png|50px|link=https://www.freebsd.org/ports/categories-grouped.html]]'''Ports Collection.''' |
| |- | | |- |
| !colspan="3"| | | !colspan="3"| |
| |- | | |- |
− | !colspan="3"|'''Back to ''' [[image:Icon Disti GhostBSD.png|50px|link=Science and Engineering]] '''Science and Engineering''' | + | !colspan="3"|'''Back to the''' [[image:Icon Disti GhostBSD.png|50px|link=Office Applications]]'''Office Applications''' |
| + | |
| |} | | |} |
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| [[Category:Station]] | | [[Category:Station]] |