Difference between revisions of "Science"
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|Clock-driven simulator for spiking neural networks | |Clock-driven simulator for spiking neural networks | ||
|[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/brian/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=http://www.briansimulator.org/]] | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/brian/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=http://www.briansimulator.org/]] | ||
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|cdf3 | |cdf3 | ||
|Device independent view of the CDF data model | |Device independent view of the CDF data model | ||
|[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/cdf/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://cdf.gsfc.nasa.gov/]] | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/cdf/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://cdf.gsfc.nasa.gov/]] | ||
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|cgribex | |cgribex | ||
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|Schrodinger-developed 2D coordinate generation | |Schrodinger-developed 2D coordinate generation | ||
|[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/coordgenlibs/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://github.com/schrodinger/coordgenlibs]] | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/coordgenlibs/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://github.com/schrodinger/coordgenlibs]] | ||
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|devisor | |devisor | ||
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|Free open source neural network library | |Free open source neural network library | ||
|[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/math/fann/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=http://leenissen.dk/]] | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/math/fann/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=http://leenissen.dk/]] | ||
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|gnudatalanguage | |gnudatalanguage | ||
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|Scalable Linear Solvers and Multigrid Methods | |Scalable Linear Solvers and Multigrid Methods | ||
|[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/hypre/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://computation.llnl.gov/projects/hypre-scalable-linear-solvers-multigrid-methods]] | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/hypre/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://computation.llnl.gov/projects/hypre-scalable-linear-solvers-multigrid-methods]] | ||
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|libaec | |libaec | ||
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|Perl extension for handling of WMO BUFR files | |Perl extension for handling of WMO BUFR files | ||
|[[File:Icon FreeBSD.png|100px|link=ttps://svnweb.freebsd.org/ports/head/science/p5-Geo-BUFR/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://metacpan.org/release/Geo-BUFR]] | |[[File:Icon FreeBSD.png|100px|link=ttps://svnweb.freebsd.org/ports/head/science/p5-Geo-BUFR/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://metacpan.org/release/Geo-BUFR]] | ||
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|p5-Mcstas-Tools | |p5-Mcstas-Tools | ||
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|paraview | |paraview | ||
|Powerful scientific data visualization application | |Powerful scientific data visualization application | ||
| − | |[[https://svnweb.freebsd.org/ports/head/science/paraview/pkg-descr?revision=HEAD]] [[http://www.paraview.org/]] | + | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/paraview/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=http://www.paraview.org/]] |
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|parmgridgen | |parmgridgen | ||
|Library for obtaining a sequence of successive coarse grids | |Library for obtaining a sequence of successive coarse grids | ||
| − | |[[https://svnweb.freebsd.org/ports/head/math/parmgridgen/pkg-descr?revision=HEAD]] [[http://www.mgnet.org/mgnet-codes-parmgridgen.html]] | + | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/math/parmgridgen/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=http://www.mgnet.org/mgnet-codes-parmgridgen.html]] |
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|plinkseq | |plinkseq | ||
|Toolset for working with human genetic variation data | |Toolset for working with human genetic variation data | ||
| − | |[[https://svnweb.freebsd.org/ports/head/biology/plinkseq/pkg-descr?revision=HEAD]] [[http://atgu.mgh.harvard.edu/plinkseq/]] | + | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/biology/plinkseq/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=http://atgu.mgh.harvard.edu/plinkseq/]] |
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|plplot | |plplot | ||
|Scientific plotting package | |Scientific plotting package | ||
| − | |[[https://svnweb.freebsd.org/ports/head/math/plplot/pkg-descr?revision=HEAD]] [[http://plplot.sourceforge.net/]] | + | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/math/plplot/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=http://plplot.sourceforge.net/]] |
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|pnetcdf | |pnetcdf | ||
|Library providing high-performance I/O | |Library providing high-performance I/O | ||
| − | |[[https://svnweb.freebsd.org/ports/head/science/pnetcdf/pkg-descr?revision=HEAD]] [[https://trac.mcs.anl.gov/projects/parallel-netcdf]] | + | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/pnetcdf/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://trac.mcs.anl.gov/projects/parallel-netcdf]] |
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|praat | |praat | ||
|Phonetics by Computer | |Phonetics by Computer | ||
| − | |[[https://svnweb.freebsd.org/ports/head/audio/praat/pkg-descr?revision=HEAD]] [[http://www.praat.org]] | + | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/audio/praat/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=http://www.praat.org]] |
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|psychopy | |psychopy | ||
|Psychophysics toolkit for Python | |Psychophysics toolkit for Python | ||
| − | |[[https://svnweb.freebsd.org/ports/head/science/psychopy/pkg-descr?revision=HEAD]] [[http://www.psychopy.org/]] | + | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/psychopy/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=http://www.psychopy.org/]] |
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|pulseview | |pulseview | ||
|GUI client that supports various hardware logic analyzers | |GUI client that supports various hardware logic analyzers | ||
| − | |[[https://svnweb.freebsd.org/ports/head/science/pulseview/pkg-descr?revision=HEAD]] [[https://sigrok.org/]] | + | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/pulseview/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://sigrok.org/]] |
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|py27-DendroPy | |py27-DendroPy | ||
|Phylogenetic computing library | |Phylogenetic computing library | ||
| − | |[[https://svnweb.freebsd.org/ports/head/science/py-DendroPy/pkg-descr?revision=HEAD]] [[http://packages.python.org/DendroPy/]] | + | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/py-DendroPy/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=http://packages.python.org/DendroPy/]] |
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|py27-GPy | |py27-GPy | ||
|Gaussian process toolbox | |Gaussian process toolbox | ||
| − | |[[https://svnweb.freebsd.org/ports/head/science/py-GPy/pkg-descr?revision=HEAD]] [[https://sheffieldml.github.io/GPy/]] | + | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/py-GPy/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://sheffieldml.github.io/GPy/]] |
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|py27-GPyOpt | |py27-GPyOpt | ||
|Bayesian optimization toolbox based on GPy | |Bayesian optimization toolbox based on GPy | ||
| − | |[[https://svnweb.freebsd.org/ports/head/science/py-GPyOpt/pkg-descr?revision=HEAD]] [[https://sheffieldml.github.io/GPyOpt/]] | + | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/py-GPyOpt/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://sheffieldml.github.io/GPyOpt/]] |
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|py27-OpenFermion | |py27-OpenFermion | ||
|Electronic structure package for quantum computers | |Electronic structure package for quantum computers | ||
| − | |[[https://svnweb.freebsd.org/ports/head/science/py-OpenFermion/pkg-descr?revision=HEAD]] [[https://github.com/quantumlib/OpenFermion]] | + | |[[File:Icon FreeBSD.png|100px|link=https://svnweb.freebsd.org/ports/head/science/py-OpenFermion/pkg-descr?revision=HEAD]] [[File:1329059652.png|35px|link=https://github.com/quantumlib/OpenFermion]] |
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!colspan="3"| | !colspan="3"| | ||
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| − | !colspan="3"|'''If you don't find a package, you are looking for, <br/>we recommend to search the ''' [[File:Icon FreeBSD.png|50px|link=https://www.freebsd.org/ports/ | + | !colspan="3"|'''If you don't find a package, you are looking for, <br/>we recommend to search the ''' [[File:Icon FreeBSD.png|50px|link=https://www.freebsd.org/ports/science.html]]'''Category Science in tne Ports Collection.''' |
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!colspan="3"| | !colspan="3"| | ||
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| − | !colspan="3"|'''Back to | + | !colspan="3"|'''Back to ''' [[image:Icon Disti GhostBSD.png|50px|link=Science and Engineering]] '''Science and Engineering''' |
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|} | |} | ||
[[Category:Station]] | [[Category:Station]] | ||
Latest revision as of 12:47, 22 January 2020
Welcome to the Science
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| App/Package | Abstract | Addition or Link |
|---|---|---|
| For scanning please look here. | ||
| InsightToolkit | Insight Toolkit |  
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| OpenSim-core | Software for modeling of musculoskeletal structures |
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| R-cran-AMORE | MORE flexible neural network package |
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| R-cran-DCluster | Functions for the detection of spatial clusters of diseases |
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| R-cran-Epi | Package for statistical analysis in epidemiology |
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| R-cran-bayesm | Bayesian Inference for Marketing/Micro-econometrics |
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| R-cran-cmprsk | Subdistribution Analysis of Competing Risks |
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| R-cran-e1071 | Misc Functions of the Department of Statistics (e1071), TU Wien |
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| R-cran-eco | R Package for Ecological Inference in 2x2 Tables |
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| R-cran-epicalc | Epidemiological calculator |
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| R-cran-etm | Empirical Transition Matrix |
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| R-cran-fastICA | FastICA Algorithms to Perform ICA and Projection Pursuit |
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| R-cran-kernlab | Kernel-Based Machine Learning Lab |
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| R-cran-psych | Psych package for the R project |
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| R-cran-snow | Support for simple parallel computing in R |
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| R-cran-som | Self-Organizing Map |
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| R-cran-udunits2 | Udunits-2 Bindings for R |
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| SCIP | Solver for mixed integer, mixed integer nonlinear programming |
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| SimGrid | Simulator of the behavior of large-scale distributed systems |
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| SoPlex | Optimization package for solving linear programming problems (LPs) |
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| abinit | Full-featured atomic-scale first-principles simulation software |
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| adios2 | Next generation of ADIOS developed in the Exascale Computing Program |
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| afni | Advanced Functional Neuro Imaging |
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| agrum- | Graphical modeler for Bayesian networks, influence diagrams, etc |
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| atompaw | Tool for projector augmented wave functions for molecular simulations |
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| brian | Clock-driven simulator for spiking neural networks |
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| cdf3 | Device independent view of the CDF data model |
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| cgribex | Lightweight GRIBEX in C with portable Fortran interface |
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| colt | Java package for scalable scientific and technical computing |
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| coordgenlibs | Schrodinger-developed 2D coordinate generation |
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| devisor | Design and Visualization Software Resource for FeatFlow |
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| dftbplus | DFTB+: Package for performing fast atomistic simulations |
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| dkh | Wolf, Reiher, and Hess's Douglas-Kroll-Hess relativistic correction |
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| dlib-cpp | Machine learning framework written in C++ |
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| dvc | Git for data scientists: manage code and data together |
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| erd | AcesIII electron repulsion integrals |
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| fann | Free open source neural network library |
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| gnudatalanguage | GDL, a free IDL compatible incremental compiler |
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| grads | The Grid Analysis and Display System |
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| gsmc | Smith chart program for impedance matching |
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| gtamsanalyzer | Qualitative Research Software for the Free World for GNUstep |
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| gwyddion | Gtk2 based SPM data visualization and analysis tool |
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| h5utils | Set of utilities for visualization and conversion of HDF5 format |
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| h5z-zfp | Registered ZFP compression plugin for HDF5 |
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| harminv | Solver of harmonic inversion |
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| hdf | Hierarchical Data Format library (from NCSA) |
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| hdf-szip | Lossless compression library for scientific data |
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| hdf5 | Hierarchical Data Format library (from NCSA) |
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| hdf5-18 | Hierarchical Data Format library (from NCSA) 1.8 |
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| healpix | Software for pixelization, visualization, etc of data on the sphere |
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| hhsuite | Remote protein homology detection suite |
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| highfive | Header-only C++ HDF5 interface |
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| hypre | Scalable Linear Solvers and Multigrid Methods |
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| libaec | Adaptive entropy coding library |
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| libccp4 | Protein X-ray crystallography toolkit |
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| libgeodecomp | LibGeoDecomp is an auto-parallelizing library for computer simulations |
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| libghemical | Support libraries of science/ghemical port |
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| libquantum | C library for quantum computing and quantum simulation |
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| libsvm | Library for Support Vector Machines |
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| libxc | Library of exchange-correlation functionals for DFT |
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| libxsmm | Library for dense and sparse matrix operations and deep learning |
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| madness | Multiresolution adaptive numeric environment for scientific simulation |
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| mcstas | Monte Carlo neutron ray tracing package |
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| mcstas-comps | Component Library for the McStas neutron ray tracing package |
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| mcxtrace | Monte Carlo X-ray tracing package |
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| mcxtrace-comps | Component Library for the McXtrace X-ray tracing package |
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| mdynamix | General purpose molecular dynamics code |
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| minc2 | Medical Imaging NetCDF |
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| nifticlib | Neuroimaging Informatics Technology Initiative data format |
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| octopus | Scientific program aimed at the ab initio virtual experimentation |
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| p5-Algorithm-SVMLight | Perl interface to SVMLight Machine-Learning Package |
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| p5-Geo-BUFR | Perl extension for handling of WMO BUFR files |
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| p5-Mcstas-Tools | Perl based tools for the McStas neutron ray tracing package |
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| p5-Quantum-Superpositions | QM-like superpositions in Perl |
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| pagmo2 | Platform to perform parallel computations of optimization tasks |
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| paraview | Powerful scientific data visualization application |
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| parmgridgen | Library for obtaining a sequence of successive coarse grids |
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| plinkseq | Toolset for working with human genetic variation data |
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| plplot | Scientific plotting package |
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| pnetcdf | Library providing high-performance I/O |
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| praat | Phonetics by Computer |
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| psychopy | Psychophysics toolkit for Python |
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| pulseview | GUI client that supports various hardware logic analyzers |
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| py27-DendroPy | Phylogenetic computing library |
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| py27-GPy | Gaussian process toolbox |
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| py27-GPyOpt | Bayesian optimization toolbox based on GPy |
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| py27-OpenFermion | Electronic structure package for quantum computers |
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| If you don't find a package, you are looking for, we recommend to search the  Category Science in tne Ports Collection.
| ||
Back to  Science and Engineering
| ||
