Difference between revisions of "Biology"

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! scope="col" style="width: 250px;"|'''Addition or Link'''
 
! scope="col" style="width: 250px;"|'''Addition or Link'''
 
|-
 
|-
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|xxx
+
|CheckM
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|xxx
+
|Quality assessment tool for the microbial genomes
−
|xxx
+
|[[https://svnweb.freebsd.org/ports/head/biology/checkm/pkg-descr?revision=HEAD]] [[https://ecogenomics.github.io/CheckM/]]
 +
|-
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|GroopM
 +
|Metagenomic binning suite
 +
|[[https://svnweb.freebsd.org/ports/head/biology/groopm/pkg-descr?revision=HEAD]] [[http://ecogenomics.github.io/GroopM/]]
 +
|-
 +
|InsightToolkit
 +
|Insight Toolkit
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|[[https://svnweb.freebsd.org/ports/head/science/InsightToolkit/pkg-descr?revision=HEAD]] [[http://www.itk.org]]
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|-
 +
|Jellyfish
 +
|Fast, memory-efficient counting of k-mers in DNA
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|[[https://svnweb.freebsd.org/ports/head/biology/jellyfish/pkg-descr?revision=HEAD]] [[http://www.genome.umd.edu/jellyfish.html]]
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|-
 +
|abyss
 +
|Assembly By Short Sequences: parallel, paired-end sequence assembler
 +
|[[https://svnweb.freebsd.org/ports/head/science/afni/pkg-descr?revision=HEAD]] [[http://afni.nimh.nih.gov/afni/]]
 +
|-
 +
|afni
 +
|Advanced Functional Neuro Imaging
 +
|[[https://svnweb.freebsd.org/ports/head/science/afni/pkg-descr?revision=HEAD]] [[http://afni.nimh.nih.gov/afni/]]
 +
|-
 +
|artemis
 +
|DNA sequence viewer and annotation tool
 +
|[[https://svnweb.freebsd.org/ports/head/biology/artemis/pkg-descr?revision=HEAD]] [[https://www.sanger.ac.uk/science/tools/artemis]]
 +
|-
 +
|avida
 +
|Auto-adaptive genetic system designed for ALife research
 +
|[[https://svnweb.freebsd.org/ports/head/biology/avida/pkg-descr?revision=HEAD]] [[http://avida.devosoft.org/]]
 +
|-
 +
|babel
 +
|Converts among various molecular file formats
 +
|[[https://svnweb.freebsd.org/ports/head/biology/babel/pkg-descr?revision=HEAD]] [[http://smog.com/chem/babel/]]
 +
|-
 +
|bamtools
 +
|API and toolkit for handling BAM files
 +
|[[https://github.com/pezmaster31/bamtools]]
 +
|-
 +
|biococoa
 +
|Bioinformatics framework
 +
|[[https://svnweb.freebsd.org/ports/head/biology/biococoa/pkg-descr?revision=HEAD]] [[http://bioinformatics.org/biococoa/]]
 +
|-
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Revision as of 04:57, 15 January 2020

Welcome to theIcon Disti GhostBSD.png Biology
App/Package Abstract Addition or Link
CheckM Quality assessment tool for the microbial genomes [[1]] [[2]]
GroopM Metagenomic binning suite [[3]] [[4]]
InsightToolkit Insight Toolkit [[5]] [[6]]
Jellyfish Fast, memory-efficient counting of k-mers in DNA [[7]] [[8]]
abyss Assembly By Short Sequences: parallel, paired-end sequence assembler [[9]] [[10]]
afni Advanced Functional Neuro Imaging [[11]] [[12]]
artemis DNA sequence viewer and annotation tool [[13]] [[14]]
avida Auto-adaptive genetic system designed for ALife research [[15]] [[16]]
babel Converts among various molecular file formats [[17]] [[18]]
bamtools API and toolkit for handling BAM files [[19]]
biococoa Bioinformatics framework [[20]] [[21]]
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